Configuration element to determine the output type of hits.
Definition: output.hpp:59
Provides compatibility matrix for search configurations.
detail::search_output_text_position constexpr text_position
Configuration element to receive all hits within the lowest number of errors.
Definition: output.hpp:42
A special sub namespace for the search configurations.
Provides the configuration for maximum number of errors for all error types.
A strong type of underlying type uint8_t or double that represents the number or rate of deletions...
Definition: max_error_common.hpp:130
detail::search_mode_all constexpr all
Configuration element to receive all hits within the error bounds.
Definition: mode.hpp:43
Provides the configuration for returning positions in the text.
Configuration element to determine the search mode.
Definition: mode.hpp:86
A strong type of underlying type uint8_t or double that represents the number or rate of total errors...
Definition: max_error_common.hpp:30
A strong type of underlying type uint8_t or double that represents the number or rate of substitution...
Definition: max_error_common.hpp:64
Provides the configuration for maximum number of errors in percent of the query length across all err...
Provides the mode configuration to define the search modes "all", "all_best", "best" and "strata"...
Provides seqan3::detail::configuration and utility functions.
constexpr configuration default_configuration
The default configuration.
Definition: default_configuration.hpp:28
A configuration element for the maximum number of errors across all error types (mismatches, insertions, deletions). This is an upper bound of errors independent from error numbers of specific error types.
Definition: max_error.hpp:43
Collection of elements to configure an algorithm.
Definition: configuration.hpp:81
A strong type of underlying type uint8_t or double that represents the number or rate of insertions...
Definition: max_error_common.hpp:97