constexpr detail::global_alignment_type global_alignment
Helper variable to select the global alignment.
Definition: align_config_mode.hpp:54
A strong type of underlying type score_type that represents the score of any character against a gap ...
Definition: gap_scheme.hpp:34
Provides global alignment configurations.
A scheme for representing and computing scores against gap characters.
Definition: gap_scheme.hpp:84
Provides seqan3::nucleotide_scoring_scheme.
Provides seqan3::gap_scheme.
A special sub namespace for the alignment configurations.
Definition: align_config_aligned_ends.hpp:514
Provides seqan3::align_config::gap.
Sets the scoring scheme for the alignment algorithm.
Definition: align_config_scoring.hpp:41
A data structure for managing and computing the score of two nucleotides.
Definition: nucleotide_scoring_scheme.hpp:37
Sets the alignment mode.
Definition: align_config_mode.hpp:94
constexpr configuration edit
Shortcut for edit distance configuration.
Definition: align_config_edit.hpp:52
Provides seqan3::detail::configuration and utility functions.
Provides seqan3::align_cfg::scoring.
Collection of elements to configure an algorithm.
Definition: configuration.hpp:81
A configuration element for the gap scheme.
Definition: align_config_gap.hpp:42